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PCR |
Name: |
WP2.2 ELISA-PCR CytochromeB |
Type: |
ELISA-PCR |
System: |
QuaLitative (Light Cycler; TaqMan; Matsunaga) |
Genetic Element: |
Mitochondrial Cytochrome b |
Ampl.Length: |
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GenomSize: |
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AnnTemp: |
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Taxonomy: |
Animals |
PCR Description: |
WP 2.2: Development of ELISA-PCR based detection and quantification systems.
ELISA-PCR system for cattle, pig sheep and horse
Target Element: Cytochrome b |
Temp. Time Program: |
PCR profile
Taq Activation 95 °C 120 sec
Cycles 25
Denat. Amplif. Extension
-------------------------------------------------
Target Temp. (°C) 95 62 72
Incubation time (sec) 30 20 30
Final extension 72°C 120 sec |
Device: |
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Master Mix: |
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nPrimers: |
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Organisation: |
TIB |
Validation: |
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Sequence: |
X56295 |
Remarks: |
Detection of Cattle (66), Pig (79), Sheep and Horse.
Target Element: Cytochrome b |
Primers |
PPName |
Type |
PrimerSequence |
Length |
T_ann |
TmThermo |
Tm2AT |
%GC |
Position |
cons_back_G_ELISA |
Antisense |
gTCTg ATgTg TAgTg TATTg CTAgg AATAg g |
31 |
68.1 |
59.4 |
88 |
41.9 |
144-174 |
cons_back_M_ELISA |
Antisense |
gTCgg ATgTg TAgTg TATTg CTAgg AATAg g |
31 |
71.3 |
62.5 |
90 |
45.2 |
144-174 |
BIO_SIM |
Sense |
BIO-g ACCTC CCAgC TCCAT CAAAC ATCTC ATCTT gAgAA A |
37 |
72.1 |
72.4 |
95 |
45.9 |
58-95 |
Bos_misC |
Probe_Antisense |
FL-CC CAggA gggAA CCgCA A |
18 |
71.7 |
62.9 |
60 |
66.7 |
14609-14626 |
Sus_misC_C |
Probe_Antisense |
FL-TA ggATT TgCAA gATCA ggCCg ATg |
25 |
72.1 |
64.3 |
74 |
48 |
57-81 |
Ovi_A_ELISA |
Probe_Antisense |
FL-TA gAATC TgTAA AATTA AgCAA ATgCC TAg |
30 |
66.8 |
58.1 |
78 |
30 |
109-138 |
Equ_misA_G_A |
Probe_Antisense |
FL-gT TAAgA TTTgg AggAT AAggg AgAAT |
27 |
66.3 |
58.5 |
74 |
37 |
57-83 |
Sequence |
NCBI-Acc: |
X56295 |
Sequence Description: |
S.scrofa mitochondrion cytb gene for cytochrome b. |
BaseCount: |
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DNA-Sequence: |
X56295.txt |
AminoAcid-Sequence: |
X56295.txt |
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